No idea what's involved in a supercharger install, but did you verify the simple stuff like there's nothing that would prevent the engine from getting sufficient air, fuel, and spark? Did you change any of those things during the install? I would double-check the easier things before jumping into electronics and tune.
Knowing myself, it would be something dumb like a rag stuffed in a throttle body I forgot to remove.
In any case, good luck! Hopefully it's nothing expensive.
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