If the error occurred before the flash transferred any data then the car will start. You might have to put the OEM MAP sensor back on. It won't hurt it, if the flash has failed it won't try and fire up. This is just a good confirmation of battery quality, mine died while installing my SC. Do as Steve said and manually select ECU type and try again.
Where in the process did it fail? Immediately/mid flash etc. When you open the flash screen, what happens when you hit Query ECU?
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