So some updates to the scenario, I tried adjusting the window, it closes better but it still hasn't fixed the motor not engaging smoothly, and it only goes up in segments.. I ran techstream and tried to clear the DTC's but B2316 kept coming back which makes me think the switch would be bad.. but a switching going bad after replacing window sound likely?
I know the jam switch still works because the window goes down when it detects door is opening
Here is a useful link for anyone replacing windows btw
http://www.ft86club.com/forums/attac...6&d=1389643310